Comparative Analysis of Regulatory Motif Discovery Tools for Transcription Factor Binding SitesWei Wei Xiao-Dan Yu
FragAnchor: A Large-Scale Predictor of Glycosylphosphatidylinositol Anchors in Eukaryote Protein Sequences by Qualitative ScoringGuylaine Poisson Cedric Chauve Xin Chen Anne Bergeron
Dynamic Proteome Changes of Shigella flexneri 2a During Transition from Exponential Growth to Stationary PhaseLi Zhu Xian-Kai Liu Ge Zhao Yi-Dan Zhi Xin Bu Tian-Yi Ying Er-Ling Feng Jie Wang Xue-Min Zhang Pei-Tang Huang Heng-Liang Wang
Adaptive Evolution of cry Genes in Bacillus thuringiensis: Implications for Their Specificity DeterminationJin-Yu Wu Fang-Qing Zhao Jie Bai Gang Deng Song Qin Qi-Yu Bao
Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-RegulationMaarten Clements Eugene P. van Someren Theo A. Knijnenburg Marcel J.T. Reinders
Proteomics Technologies and ChallengesWilliam C.S. Cho
A Survey of the Availability of Primary Bioinformatics Web ResourcesTrias Thireou George Spyrou Vassilis Atlamazogloul
Genetic Analysis of 15 STR Loci in Chinese Han Population from West ChinaYa-Jun Deng Jiang-Wei Yan Xiao-Guang Yu Yuan-Zhe Li Hao-Fang Mu Yan-Qing Huang Xiao-Tie Shi Wei-Min Sun
Genetic Polymorphisms of Nine X-STR Loci in Four Population Groups from Inner Mongolia, ChinaQiao-Fang Hou Bin Yu Sheng-Bin Li
Restauro-G: A Rapid Genome Re-Annotation System for Comparative GenomicsSatoshi Tamaki Kazuharu Arakawa Nobuaki Kono Masaru Tomita
Generation of Synthetic Transcriptome Data with Defined Statistical Properties for the Development and Testing of New Analysis MethodsGuillaume Brysbaert Sebastian Noth Arndt Benecke
Comparative Analysis of the 100 kb Region Containing the Pi-k^h Locus Between indica and japonica Rice LinesS.P. Kumar V. Dalal N.K. Singh T.R. Sharma
Alternative Splicing and Expression Profile Analysis of Expressed Sequence Tags in Domestic PigLiang Zhang Lin Tao Lin Ye Ling He Yuan-Zhong Zhu Yue-Dong Zhu Yan Zhou
Analysis of Pathway Activity in Primary Tumors and NCI60 Cell Lines Using Gene Expression Profiling DataXing-Dong Feng Shu-Guang Huang Jian-Yong Shou Bi-Rong Liao Jonathan M. Yingling Xiang Ye Xi Lin Lawrence M. Gelbert Eric W. Su Jude E. Onyia Shu-Yu Li
A Brief Review of Short Tandem Repeat MutationHao Fan Jia-You Chu
A Content-Centric Organization of the Genetic CodeJun Yu
KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model AveragingZhang Zhang Jun Li Xiao-Qian Zhao Jun Wang Gane Ka-Shu Wong Jun Yu
VGIchan: Prediction and Classification of Voltage-Gated Ion ChannelsSudipto Saha Jyoti Zack Balvinder Singh G.P.S. Raghava
A Network Partition Algorithm for Mining Gene Functional Modules of Colon Cancer from DNA Microarray DataXiao-Gang Ruan Jin-Lian Wang Jian-Geng Li
Prediction of GPCR-G Protein Coupling Specificity Using Features of Sequences and Biological FunctionsToshihide Ono Haretsugu Hishigaki
Comparative Analysis of Splice Site Regions by Information ContentT. Shashi Rekha Chanchal K. Mitra
High-Sensitivity Transcriptome Data Structure and Implications for Analysis and Biologic InterpretationSebastian Noth Guillaume Brysbaert Francois-Xavier Pellay Arndt Benecke
Comparative Analysis of Eubacterial DNA Polymerase Ⅲ Alpha SubunitsXiao-Qian Zhao Jian-Fei Hu Jun Yu
Optimal Allocation of Replicates for Measurement Evaluation StudiesStanislav O. Zakharkin Kyoungmi Kim Alfred A. Bartolucci Grier P. Page David B. Allison
Comparative Analysis of Transcription Start Sites Using Mutual InformationD. Ashok Reddy Chanchal K. Mitra
Phylogenetic Analysis of RhoGAP Domain-Containing ProteinsMarcelo M. Brandao Karina L. Silva-Brandao Fernando F. Costa Sara T.O. Saad
Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous Substitution RatesZhang Zhang Jun Yu
Comparative Proteome Analysis of Breast Cancer and Adjacent Normal Breast Tissues in HumanShi-Shan Deng Tian-Yong Xing Hong-Ying Zhou Ruo-Hong Xiong You-Guang Lu Bin Wen Shang- Qing Liu Hui-Jun Yang
A Combined Computational and Experimental Study on the Structure-Regulation Relationships of Putative Mammalian DNA Replication Initiator GINSReiko Hayashi Taknko Arauchi Moe Tategu Yuya Goto Kenichi Yoshida
Glia Maturation Factor Gamma (GMFG): A Cytokine-Responsive Protein During Hematopoietic Lineage Development and Its Functional Genomics AnalysisYing Shi Ling Chen Lance A. Liotta Hong-Hui Wan Griffin P. Rodgers
Functional Characterization of Gibberellin-Regulated Genes in Rice Using Microarray SystemAsad Jan Setsuko Komatsu
Erratum: High-throughput Three-dimensional Gel Electrophoresis for Versatile Utilities: A Stacked Slice-gel System for Separation and Reactions (4SR)Md. Salimullah Masaki Mori Koichi Nishigaki
PHProteomicDB: A Module for Two-dimensional Gel Electrophoresis Database Creation on Personal Web SitesPascal Pernet Arnaud Bruneel Bruno Baudin Michel Vaubourdolle
Predicting the Subcellular Localization of Human Proteins Using Machine Learning and Exploratory Data AnalysisGeorge K. Acquaah-Mensah Sonia M. Leach Chittibabu Guda
Improve Survival Prediction Using Principal Components of Gene Expression DataYi-Jing Shen Shu-Guang Huang